Source Job

Europe 6w PTO

  • Design and develop scalable Nextflow pipelines, ensuring automated testing and quality control measures.
  • Establish and govern pipeline development standards, best practices, and documentation across R&D.
  • Manage pipeline infrastructure, including versioning, deployment processes, and compatibility across compute environments.

Python R Docker AWS

20 jobs similar to Bioinformatics Pipeline Engineer

Jobs ranked by similarity.

$120,000–$207,000/yr
US Global

  • Design, build, and maintain enterprise-scale data pipelines on Snowflake Data Platform.
  • Design, build, and maintain cloud-native AI/ML solutions (AWS, Azure) that support advanced analytics and decision making.
  • Implement best practices for data quality, observability, lineage, and governance.

FUJIFILM Biotechnologies is dedicated to making a real difference in people’s lives. They partner with innovative biopharma companies to advance vaccines, cures, and gene therapies, fostering a culture that fuels passion and drive, known as Genki.

Australia New Zealand

  • Owning End-to-End Technical Solutions: Designing, documenting, and implementing complex infrastructure projects.
  • Building Developer-Facing Tools & Automation: Creating pragmatic automation that eliminates repetitive manual work for engineers.
  • Collaborating & Enabling Engineering Teams: Partnering with engineering teams to understand pain points and gather requirements.

Canva is a design platform that enables users to create social media graphics, presentations, posters, documents and other visual content. They foster a culture of connectivity and fun, offering employees various benefits and opportunities for growth.

US

  • Develop high-quality features, tools, and integrations that help customers smoothly adopt Dagster.
  • Work directly with users to understand challenges and translate feedback into actionable improvements.
  • Proactively identify and address opportunities for enhancement in code quality, user documentation, or overall performance.

Dagster Labs is an early stage, well-funded startup. They have a proven track record of shipping open source software with global adoption and put a premium on respectful, clear, and complete communication.

  • Design, develop, and implement platform solutions that enhance the reliability, security, and scalability of the Database Platform infrastructure.
  • Provide technical leadership in AWS cloud infrastructure, networking, CI/CD, and security for cloud infrastructure solutions.
  • Mentor and coach team members, fostering a culture of knowledge sharing, technical excellence, and continuous improvement.

SYSTABUILD is building a shared cloud and platform foundation for a group of leading software companies in the construction, CAD and ERP domain. They are looking for a Lead Cloud Infrastructure Engineer to take a key role in designing, operating, and evolving their central cloud infrastructure and platform services.

Latin America

  • Design, build, maintain, and operate scalable streaming and batch data pipelines.
  • Work with AWS services, including Redshift, EMR, and ECS, to support data processing and analytics workloads.
  • Develop and maintain data workflows using Python and SQL.

Southworks helps companies with software development and digital transformation. They focus on solving complex problems and delivering innovative solutions.

$120,000–$150,000/yr
US

  • Design, build, and maintain automated CI/CD pipelines to enable fast, secure, and reliable deployments.
  • Provision, manage, and optimize core AWS services to support scalable, highly available applications.
  • Implement and maintain IaC frameworks to ensure infrastructure is version-controlled, repeatable, and auditable.

Arine is a healthcare technology and clinical services company dedicated to ensuring individuals receive the safest and most effective treatment. They are backed by leading healthcare investors and collaborate with top healthcare organizations, managing more than 18 million lives across prominent health plans.

Europe

  • Design, develop, and maintain high-quality software solutions using Python.
  • Contribute to the design and evolution of scalable and maintainable software architectures.
  • Deploy, operate, and monitor applications in cloud environments (AWS, Azure, or GCP).

Lynx Analytics works on real-world AI and advanced analytics solutions with measurable business impact. They have a collaborative culture that values real outcomes, offering high ownership and rapid learning opportunities.

US

  • Responsible for building clean, scalable, and reliable solutions that support data-driven and AI‑enabled environments.
  • Developing well‑tested Python applications and working within cloud-native ecosystems.
  • Collaborating effectively across engineering, data, and scientific teams, turning complex requirements into production-ready solutions.

Onebridge, a Marlabs Company, is a global AI and Data Analytics Consulting Firm that empowers organizations worldwide to drive better outcomes through data and technology. Since 2005, we have partnered with some of the largest healthcare, life sciences, financial services, and government entities across the globe.

$230,000–$265,000/yr
US Unlimited PTO

  • Design and build robust, highly scalable data pipelines and lakehouse infrastructure with PySpark, Databricks, and Airflow on AWS.
  • Improve the data platform development experience for Engineering, Data Science, and Product by creating intuitive abstractions, self‑service tooling, and clear documentation.
  • Own and maintain core data pipelines and models that power internal dashboards, ML models, and customer-facing products.

Parafin aims to grow small businesses by providing them with the financial tools they need through the platforms they already sell on. They are a Series C company backed by prominent venture capitalists, with a tight-knit team of innovators from companies like Stripe, Square, and Coinbase.

$120,000–$150,000/yr
US

  • Architect and maintain central storage and cloud environment.
  • Design and automate scalable ELT/ETL pipelines for data.
  • Support scientists and operational teams by designing data models.

Funga is a public benefit corporation using forest fungal networks to address climate change. They combine DNA sequencing and machine learning with forest microbiome research to improve wood creation, carbon sequestration, and forest resilience. They are a team of scientists and builders aiming to remove three gigatons of carbon dioxide from the atmosphere by 2050.

Global 1w PTO

  • Designing and implementing core components of Gcore’s cloud account management platform.
  • Writing high-quality Python code using FastAPI, relational databases, RabbitMQ, Redis.
  • Building APIs and internal tools to provide real-time visibility into account activities, user actions, and product-level availability.

They are a global provider of infrastructure and software solutions for AI, cloud, network, and security, powering everything from real-time communication and streaming to enterprise AI and secure web applications. They are a global team of 550+ professionals building infrastructure and software that supports the entire digital ecosystem.

Europe South America

  • Design, build, and maintain efficient and reliable software and infrastructure delivery pipelines on AWS
  • Recommend upgrades to services as/when new features on the underlying platform (AWS) are built and functioning
  • Implement and maintain infrastructure as code (IaC) using tools like Terraform

They build and deploy software and infrastructure delivery pipelines. They optimize and maintain production systems and services, set up, monitor and observe key alerts, and balance service reliability with delivery speed.

Europe US Unlimited PTO 13w maternity 9w paternity

  • Design and implement new features that make our container images even more secure, performant, and scalable.
  • Develop robust internal systems that scale with us—everything from build pipelines to container registries to custom tooling that only we could dream up.
  • Define standards, write tests, and ship tooling that helps us stay high-quality and high-velocity at the same time.

Chainguard is the secure foundation for software development and deployment. They provide guarded open source software and have built the largest library of open source software that is secure by default, and is focused on hiring “Chainguardians'' with unique backgrounds, perspectives, and experiences.

US Unlimited PTO

  • Influence the technical direction for infrastructure and platform capabilities that support our rapidly growing AI product suite.
  • Architect and evolve our cloud infrastructure (primarily on AWS) to support current and future products.
  • Mentor and level up engineers across Platform and product teams; review design docs, guide architecture decisions, and model high standards.

Rad AI is on a mission to transform healthcare with artificial intelligence. Our AI-driven solutions are revolutionizing radiology—saving time, reducing burnout, and improving patient care. Rad AI has secured over $140M in funding and our valuation is at $528M.

$155,000–$185,000/yr
US Unlimited PTO

  • Lead the technical vision and execution for complex, cross-product initiatives.
  • Be a principal contributor on scalable backend systems, distributed architecture, and real-time data platforms.
  • Influence technical strategy, champion engineering excellence, and drive high-impact delivery across multiple teams.

Impiricus is an AI-powered HCP Engagement Engine that transforms how life sciences companies support physicians. Named the #1 fastest growing company in North America in 2025, they ethically connect HCPs to pharma resources to reduce go-to-market costs.

Canada

  • Design and implement intelligent test selection systems.
  • Build and maintain scalable test automation frameworks.
  • Collaborate with engineering teams to implement quality gates.

StackAdapt empowers marketers to reach, engage, and convert audiences with precision, utilizing AI-powered marketing platform. They are known for their diverse and supportive workplace, with recognition from Ad Age, G2, and Great Place to Work.

Europe

  • Develop and influence the platform architecture, making high-level design decisions.
  • Develop and maintain CI/CD pipelines to enable continuous integration and delivery of software applications.
  • Collaborate with development teams to design and implement scalable and resilient architecture solutions.

Dash0 is building an OpenTelemetry-native, delightful, simple, and AI-centric platform that eliminates vendor lock-in and meaningless toil. They aim to shape a product that developers love—all with transparent pricing and cost-control built in.

Europe

  • Drive the design, execution, and maintenance of cloud infrastructure, focusing on AWS technologies and automation.
  • Ensure platforms remain scalable, stable, and secure, supporting the demands of digital marketing and iGaming offerings.
  • Collaborate with developers and QA teams to optimize deployment workflows, troubleshoot incidents, and guarantee high availability.

Jobgether uses an AI-powered matching process to ensure your application is reviewed quickly, objectively, and fairly against the role's core requirements. They identify top-fitting candidates for partner companies and share the shortlist directly with the hiring company.

US Unlimited PTO 12w maternity 12w paternity

  • Design, implement, and maintain cloud-based infrastructure using AWS, Azure, or GCP.
  • Build, optimize, and manage continuous integration and continuous deployment (CI/CD) pipelines.
  • Integrate AI-powered tooling into engineering workflows to accelerate delivery and improve code quality.

Givebutter is a nonprofit fundraising and CRM platform. They empower millions to raise more, pay less, and give better by offering tools like fundraisers, donation forms, donor management, emails, and text blasts all in one place.

US

  • Define and evolve the technical vision for AI and agentic systems across products.
  • Design orchestration, data, and serving patterns that handle global scale with reliability.
  • Collaborate with AI Research to turn prototypes into extensible, governed production frameworks.

KnowBe4 is a cybersecurity company that puts security first, empowering over 70,000 organizations worldwide to strengthen their security culture. They value radical transparency, extreme ownership, and continuous professional development in a welcoming workplace that encourages all employees to be themselves.