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US

  • Own and improve WDL and Nextflow workflows on AWS infrastructure, ensuring pipelines are easy for scientists to run without engineering support.
  • Build and harden internal tooling to reduce manual work, and implement testing, monitoring, and alerting to surface failures early.
  • Partner with science leads and data scientists to get new methods into production, and use coding agents as a routine part of engineering.

Python AWS Terraform

16 jobs similar to Lead Bioinformatician/Engineer (Pipelines and Infrastructure)

Jobs ranked by similarity.

US

  • Own and improve WDL and Nextflow workflows on AWS for the research informatics team.
  • Manage AWS infrastructure as code with Terraform to enhance reliability and observability.
  • Build internal tooling and enable scientists to run pipelines independently without engineering support.

Natera is a global leader in cell-free DNA testing for oncology, women's health, and organ health. The team consists of highly dedicated professionals from world-class institutions, working in a collaborative and challenging environment.

$108,400–$127,500/yr
US

  • Contribute to active development on the sequencing analysis pipeline in Python, including bug fixes, feature work, and code reviews.
  • Own and maintain CI/CD pipelines, build configuration, and regression infrastructure (Jenkins, Bitbucket, HPC).
  • Respond to inbound triage requests from the field, diagnosing and resolving pipeline failures on sequencing instruments.

Singular Genomics develops genomic sequencing platforms for research and clinical applications. It is a rapidly growing company with a culture of creativity and collaboration.

US

  • Provide genomics algorithm insights for panel design and assay edge cases, working with cross-functional teams.
  • Define computational strategy for new callers, prototype and benchmark methods, and partner with engineering to productionize.
  • Serve as genomics consultant on complex escalations, separating biological causes from analytical ones, and turning investigations into durable rules.

Natera is a global leader in cell-free DNA testing dedicated to oncology, women’s health, and organ health. The team consists of highly dedicated statisticians, geneticists, doctors, and other professionals from world-class institutions, fostering a culture of hard work and growth.

US

  • Develop and maintain core cloud infrastructure using AWS, Terraform, and serverless architecture.
  • Build robust CI/CD pipelines and manage deployment tools for seamless code delivery.
  • Automate routine tasks, improve documentation, and participate in on-call support rotations.

LeanTaaS creates software solutions combining lean principles, predictive analytics, and machine learning to transform hospital and infusion center operations. More than 190 health systems and over 1,200 hospitals rely on their products, and they have raised over $300 million from top-tier investors, being named among the top 100 AI companies.

Romania

  • Develop advanced bioinformatics solutions for genomic analysis and precision medicine.
  • Build, optimize, and maintain scalable pipelines for processing complex genomic data.
  • Collaborate with interdisciplinary teams in a remote environment focused on scientific excellence.

Jobgether is an AI-powered job matching platform that connects candidates with hiring companies. It uses automated processes to review applications and provide a shortlist to employers, aiming for fair and efficient recruitment.

$133,000–$267,000/yr
US 12w maternity 12w paternity

  • Build, test, and deploy software in a continuous manner, contributing to technical specs and rollout plans.
  • Work with internal customers and stakeholders to ensure we’re solving the right problems.
  • Mentor and sponsor teammates to help them grow.

Pilot provides small businesses with dedicated finance experts and software to manage bookkeeping and financial management. The company has over 3,000 customers and has raised over $170 million, fostering a culture of innovation and growth.

$122,000–$129,200/yr
US Unlimited PTO 16w maternity 4w paternity

  • Build, operate, and scale AWS infrastructure supporting a microservices platform.
  • Develop and maintain CI/CD pipelines to make shipping fast, reliable, and safe.
  • Partner with product engineering teams, translating platform concepts into practical guidance.

Storyblocks is a content company that provides video, audio, images, and creative tools through a subscription model, empowering storytellers. They are a remote-first company with a culture driven by data, empowered communication, and ownership, recognized as a top workplace.

US

  • Lead and mentor a team of Bioinformatics Scientists in the Women's Health and Organ Health research organization.
  • Own the research strategy behind new product development, from scoping through execution.
  • Drive bioinformatics analysis for assay development, including NGS data processing and multi-omic approaches.

Natera is a global leader in cell-free DNA testing, dedicated to oncology, women's health, and organ health. The team consists of highly dedicated professionals from world-class institutions who care deeply for their work.

Global Unlimited PTO

  • Own Primer's internal developer platform end to end, including CI/CD pipelines, deployment workflows, and self-service tooling.
  • Build the human-AI development loop, creating tooling and automation for coding agent workflows.
  • Treat developer productivity as a measurable system, using frameworks like DORA to identify and fix delivery bottlenecks.

Primer provides a unified infrastructure for global payments, enabling finance and payments teams to reduce complexity and capture revenue. Backed by top investors like Sofina and Accel, they operate as a remote-first, async culture with high autonomy and low bureaucracy.

$100,000–$110,000/yr
US Unlimited PTO 14w maternity 14w paternity

  • Maintain uptime and security of AWS-hosted MERN applications and backend architectures.
  • Manage serverless functions and PySpark data pipelines, triaging incidents and automating workflows.
  • Lead blameless post-mortems and ensure HIPAA compliance across all healthcare data systems.

Cohere Health offers an AI-powered clinical intelligence platform connecting health plans and providers to improve care speed, cost, and quality. Named to the Inc. 5000 list and a top LinkedIn startup, the company is backed by leading investors and values empathy and growth.

$125,000–$145,000/yr
US Unlimited PTO

  • Implement AI-enabled features and agent workflows with senior guidance.
  • Design, build, test, and deploy small services with CI/CD pipelines.
  • Participate in on-call for owned components; mentor junior team members.

Mitratech builds world-class products simplifying operations in Legal, Risk, Compliance, and HR. We are a close-knit global team of over 35 years, serving 20,000 companies including 30% of the Fortune 500, with a diverse and inclusive culture that supports individual excellence.

Europe

  • Own the self-service data and storage layer for multimodal biological datasets.
  • Build platform services that enable self-serve data access and processing.
  • Engineer security into the data layer with access control and least-privilege.

Bioptimus is building the first universal AI foundation model for biology to accelerate breakthroughs in biomedicine. They are a fast-growing startup with over $75M in funding, headquartered in Paris, with a world-class team redefining AI and life sciences.

$173,000–$255,000/yr
US

  • Own bank systems end-to-end, including infrastructure, data platform, and vendor integrations.
  • Leverage AI tools as a force multiplier for code, design, and operations.
  • Partner with compliance and risk to build examiner-ready systems and documentation.

Affirm is reinventing credit to make it more honest and friendly, giving consumers flexibility to buy now and pay later without hidden fees. It is a remote-first public company with a strong engineering culture and a focus on employee wellbeing.

$69,675–$87,075/yr
Canada

  • Author and maintain Terraform for Snowflake resources across a multi-account, multi-region footprint.
  • Contribute to role-based access control, schema migration tooling, and CI/CD pipelines for data warehouse operations.
  • Build and operate customer-facing financial reporting APIs and PCI-scoped ETL pipelines on AWS and Snowflake.

Marqeta is a modern card issuing platform powering companies like Uber, Square, Instacart, and Klarna. They are a publicly-traded company with a focus on innovation and collaboration, offering flexible work and a range of benefits.

US

  • Own the end-to-end pipeline that powers pricing recommendations, from data ingestion through ML models to customer-facing outputs.
  • Rebuild data reconciliation from property management systems, tackling hard data and orchestration challenges.
  • Build observability, alerts, and infrastructure as code across Python, Terraform, and Ruby.

We're a profitable, growth-stage company building AI and data SaaS products for the PropTech space, including ApartmentIQ and MavenAI. We're a fully remote team of 100+ with a strict no a**holes policy and a high-performance culture.

$190,000–$225,000/yr
US

  • Design, build, and operate core cloud infrastructure on AWS, including compute, networking, and container orchestration.
  • Own the CI/CD platform used across engineering teams, including build pipelines, environment promotion, and progressive rollout.
  • Build and maintain the observability stack across the organization, including logging, metrics, distributed tracing, and alerting.

RxSense is a healthcare technology company that provides platforms and solutions to improve the management and access of cost-effective pharmacy benefits. As a leader in SaaS technology for healthcare, the company is an Equal Opportunity and Affirmative Action employer committed to diversity and collaboration.